Summary
Overview
Education
Skills
Accomplishments
Languages
References
Related courses
Timeline
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Siavash Rezaei Johi

Birmingjam,West Midlands

Summary

  • Researcher At the University of Birmingham:


1) Collaborating in a group project for exploring the differential expression of C1q subunits in hematopoietic stem cells: a possible novel insight into immune regulation (supervised by Prof. Jonathan Frampton and Dr. Csilla Várnai):

Using R language (Seurat Package), Quality Control, Data Visualization (UMAP and tSNE), Gene Expression analysis and WGCNA.


2) Identifying highly conserved lncRNA-target gene pairs using genome-wide coevolution analysis (supervised by Dr Csilla Várnai and Prof. Mueller):

Using Bash, SAMtools, BLAST, awk, BEDtools, multi-sequence alignment, custom python script, custom shell script


  • Researcher At Isfahan University of Technology:


1) Designing and executing an experimental design for a plant breeding program using 144 genotypes with two treatments and two replications, as well as collecting and analysing the following data (Supervised by Prof. Ahmad Arzani):

Collecting and analysing morphological, phenological, physiological, and malt-quality related data using SAS and Statgraphics software.


2) Designed and executed an experimental design for a plant breeding program, 64 genotypes with two treatments and two replications, and collected and analysed the following data (supervised by Prof. Ahmad Arzani):

Collecting and analysing morphological, phenological, and physiological data using statistical approaches by SAS and Statgraphics software.

Overview

8
8
years of post-secondary education

Education

Master of Science - Bioinformatics

University of Birmingham
Birmingham, United Kingdom
09.2023 - 09.2024

Master of Science - Agricultural Engineering (Plants Genetics and Breeding)

Isfahan University of Technology
Esfahan, Iran
09.2017 - 09.2020

Bachelor of Science - Agricultural Engineering (Agronomy and Plant Breeding)

Isfahan University of Technology
Esfahan, Iran
09.2013 - 07.2017

Skills

  • Research aptitude
  • DNA sequence alignment
  • Scientific research methods
  • Genomic knowledge application
  • Collaborative working
  • Bioinformatics ethical understanding
  • Familiarity with cloud-based platforms
  • Next generation sequencing analysis
  • Knowledge of biological databases
  • Statistical analysis software
  • Handling large datasets
  • R programming
  • Python programming
  • Machine learning techniques
  • Interdisciplinary collaboration
  • Molecular Biology
  • Troubleshooting errors
  • Bash
  • Genomics analysis
  • Statistics
  • SAS

Accomplishments

In 2017, I ranked 77th in the nationwide master's entrance examination for Agricultural Engineering, specializing in Plant Genetics and Breeding, in Iran.

In 2020, I ranked 28th in the nationwide Ph.D. entrance examination for Bioinformatics in Iran.

Languages

English
Fluent
Persian
Native

References

References available upon request.

Related courses

· General Genetics

· Further Topics of Genetics

· Genomics and Next Generation Sequencing

· Molecular Genetics

· Multivariate Statistical Method I

· Multivariate Statistical Method II

· Essential of Mathematics, Statistics and   Programming

· Cytogenetics

· Metabolomics and Advanced (omics)   Technologies

· Technology of Molecular Markers

· Biometry

· Statistics and Probability

· Data Analytics and Statistical Machine   Learning

· Computational Biology for Complex   Systems

· Organic Chemistry

· General Biochemistry

· Cytology

Timeline

Master of Science - Bioinformatics

University of Birmingham
09.2023 - 09.2024

Master of Science - Agricultural Engineering (Plants Genetics and Breeding)

Isfahan University of Technology
09.2017 - 09.2020

Bachelor of Science - Agricultural Engineering (Agronomy and Plant Breeding)

Isfahan University of Technology
09.2013 - 07.2017
Siavash Rezaei Johi